IREScentralIRESG329 · De novo family 329
GraphClust IRESGRoute A · GraphClust de novo17 members
De novo family 329 family, produced via RouteA_graphclust_5p7.
Consensus structure
Interactive · forna force-directed layout
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interactive force layout — drag nucleotides to rearrange · scroll to zoom · press “c” to centre
Interactive forna force-directed layout with stock colouring and parameters, rendered in the browser from the consensus sequence and dot-bracket string. Default source: RNAfold MFE.
Consensus sequence & dot-bracket
Members
| IRES ID | Virus family | Virus genus | Length (nt) | CM score | Activity |
|---|---|---|---|---|---|
Supergroup015--picorna_freshwater_SRR8512518_k99_70162_flag1_multi109_len7805_5UTR_0 | nan | nan | 591 | 694.2 | — |
Supergroup015--picorna_lake_water_SRR8535483_k141_86358_flag1_multi252_len7867_5UTR_0 | nan | nan | 610 | 693.1 | — |
Supergroup015--picorna_freshwater_SRR8512519_k99_80246_flag1_multi120_len7817_5UTR_0 | nan | nan | 585 | 673.3 | — |
IMGVR_UViG_3300031560_000207 | nan | nan | — | — | — |
IMGVR_UViG_3300029638_000184 | nan | nan | — | — | — |
Supergroup015--picorna_lake_water_SRR8536096_k141_49281_flag1_multi455_len7229_5UTR_0 | nan | nan | 598 | 679.9 | — |
IMGVR_UViG_3300021296_000006 | nan | nan | — | — | — |
Supergroup015--picorna_lake_water_SRR8535513_k141_99734_flag1_multi33_len7752_5UTR_0 | nan | nan | 583 | 662.7 | — |
Showing 8 sample rows of 17 members; the full member table ships with a future release.
Taxonomy distribution
Virus family
Virus genus (top 12)
Virus host (top 12)
Taxonomy and host counts are aggregated from the full export metadata over all 17 members; the member table above shows only a sample. Dominant virus family: nan. Host species are annotated only for NCBI-sourced genomes; members from metagenomic sources count as "unknown".
Activity
No experimental activity data for members of this family.
Model & downloads
- Consensus structure (PNG, RiboGraphViz)
- Covariance model (
final.cm) — available in the full bundle - Seed alignment (
final.sto, Stockholm) — available in the full bundle - Member FASTA — available in the full bundle