IREScentralIRESG330 · De novo family 330
GraphClust IRESGRoute A · GraphClust de novo54 members
De novo family 330 family, produced via RouteA_graphclust_5p7.
Consensus structure
Interactive · forna force-directed layout
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interactive force layout — drag nucleotides to rearrange · scroll to zoom · press “c” to centre
Interactive forna force-directed layout with stock colouring and parameters, rendered in the browser from the consensus sequence and dot-bracket string. Default source: R-scape + CaCoFold.
Consensus sequence & dot-bracket
R-scape covariation · R-scape + CaCoFold (R2R layout)
Members
| IRES ID | Virus family | Virus genus | Length (nt) | CM score | Activity |
|---|---|---|---|---|---|
IMGVR_UViG_3300028851_000125 | nan | nan | — | — | — |
Supergroup015--picorna_act_sludge_SRR8554343_k141_28631_flag1_multi27_len9033_5UTR_0 | nan | nan | 808 | 958.8 | — |
IMGVR_UViG_3300028729_000001 | Dicistroviridae | nan | — | — | — |
IMGVR_UViG_3300035576_000015 | Dicistroviridae | nan | — | — | — |
Supergroup015--picorna_freshwater_SRR12063535_k141_9942_flag1_multi16_len9056_5UTR_0 | nan | nan | 777 | 828.7 | — |
Supergroup015--picorna_act_sludge_SRR8554397_k141_22515_flag1_multi22_len9082_5UTR_0 | nan | nan | 805 | 954.9 | — |
IMGVR_UViG_3300035571_000948 | nan | nan | — | — | — |
Supergroup015--picorna_act_sludge_SRR8554366_k141_38049_flag1_multi31_len9079_5UTR_0 | nan | nan | 803 | 954.9 | — |
Showing 8 sample rows of 54 members; the full member table ships with a future release.
Taxonomy distribution
Virus family
Virus genus (top 12)
Virus host (top 12)
Taxonomy and host counts are aggregated from the full export metadata over all 54 members; the member table above shows only a sample. Dominant virus family: nan. Host species are annotated only for NCBI-sourced genomes; members from metagenomic sources count as "unknown".
Activity
No experimental activity data for members of this family.
Model & downloads
- Consensus structure (PNG, RiboGraphViz)
- Covariance model (
final.cm) — available in the full bundle - Seed alignment (
final.sto, Stockholm) — available in the full bundle - Member FASTA — available in the full bundle