IREScentralIRESG331 · De novo family 331
GraphClust IRESGRoute A · GraphClust de novo28 members
De novo family 331 family, produced via RouteA_graphclust_5p7.
Consensus structure
Interactive · forna force-directed layout
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interactive force layout — drag nucleotides to rearrange · scroll to zoom · press “c” to centre
Interactive forna force-directed layout with stock colouring and parameters, rendered in the browser from the consensus sequence and dot-bracket string. Default source: R-scape + CaCoFold.
Consensus sequence & dot-bracket
R-scape covariation · R-scape + CaCoFold (R2R layout)
Members
| IRES ID | Virus family | Virus genus | Length (nt) | CM score | Activity |
|---|---|---|---|---|---|
Supergroup015--picorna_act_sludge_SRR8554409_k141_10680_flag1_multi801_len8247_5UTR_0 | nan | nan | 520 | 391.4 | — |
IMGVR_UViG_3300029838_000113 | Dicistroviridae | nan | — | — | — |
IMGVR_UViG_3300029670_000158 | Dicistroviridae | nan | — | — | — |
Supergroup015--picorna_biofilm_SRR11414102_k141_60226_flag1_multi69_len7829_5UTR_0 | nan | nan | 488 | 593.9 | — |
IMGVR_UViG_3300029836_000085 | Dicistroviridae | nan | — | — | — |
Supergroup015--picorna_act_sludge_SRR8554408_k141_15175_flag1_multi1408_len8305_5UTR_0 | nan | nan | 565 | 393.1 | — |
IMGVR_UViG_3300029600_000128 | Dicistroviridae | nan | — | — | — |
IMGVR_UViG_3300028757_000072 | Dicistroviridae | nan | — | — | — |
Showing 8 sample rows of 28 members; the full member table ships with a future release.
Taxonomy distribution
Virus family
Virus genus (top 12)
Virus host (top 12)
Taxonomy and host counts are aggregated from the full export metadata over all 28 members; the member table above shows only a sample. Dominant virus family: Dicistroviridae. Host species are annotated only for NCBI-sourced genomes; members from metagenomic sources count as "unknown".
Activity
No experimental activity data for members of this family.
Model & downloads
- Consensus structure (PNG, RiboGraphViz)
- Covariance model (
final.cm) — available in the full bundle - Seed alignment (
final.sto, Stockholm) — available in the full bundle - Member FASTA — available in the full bundle