IREScentralIRESG337 · De novo family 337
GraphClust IRESGRoute A · GraphClust de novo10 members
De novo family 337 family, produced via RouteA_graphclust_5p7.
Consensus structure
Interactive · forna force-directed layout
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interactive force layout — drag nucleotides to rearrange · scroll to zoom · press “c” to centre
Interactive forna force-directed layout with stock colouring and parameters, rendered in the browser from the consensus sequence and dot-bracket string. Default source: RNAfold MFE.
Consensus sequence & dot-bracket
Members
| IRES ID | Virus family | Virus genus | Length (nt) | CM score | Activity |
|---|---|---|---|---|---|
Supergroup031--Clstr127_marine_sediment_SRR6808591_k141_161500_flag1_multi51_len5297_5UTR_0 | nan | nan | 674 | 816 | — |
Supergroup031--Clstr127_marine_sediment_SRR6808584_k141_200435_flag1_multi63_len5274_5UTR_0 | nan | nan | 655 | 819.4 | — |
Supergroup031--Clstr127_marine_sediment_SRR6808589_k141_103436_flag1_multi43_len5310_5UTR_0 | nan | nan | 682 | 829 | — |
Supergroup031--Clstr127_marine_sediment_SRR6808593_k141_19633_flag1_multi25_len5295_5UTR_0 | nan | nan | 662 | 829 | — |
Supergroup031--Clstr127_marine_sediment_SRR6808592_k141_2377_flag1_multi35_len5285_5UTR_0 | nan | nan | 671 | 828.8 | — |
Supergroup031--Clstr127_marine_sediment_SRR6808581_k141_65686_flag1_multi30_len5275_5UTR_0 | nan | nan | 665 | 829 | — |
Supergroup031--Clstr127_marine_sediment_SRR6808590_k141_117028_flag1_multi36_len5269_5UTR_0 | nan | nan | 659 | 823.9 | — |
Supergroup031--Clstr127_marine_sediment_SRR6808583_k141_109265_flag1_multi39_len5273_5UTR_0 | nan | nan | 671 | 827.7 | — |
Showing 8 sample rows of 10 members; the full member table ships with a future release.
Taxonomy distribution
Virus family
Virus genus (top 12)
Virus host (top 12)
Taxonomy and host counts are aggregated from the full export metadata over all 10 members; the member table above shows only a sample. Dominant virus family: nan. Host species are annotated only for NCBI-sourced genomes; members from metagenomic sources count as "unknown".
Activity
No experimental activity data for members of this family.
Model & downloads
- Consensus structure (PNG, RiboGraphViz)
- Covariance model (
final.cm) — available in the full bundle - Seed alignment (
final.sto, Stockholm) — available in the full bundle - Member FASTA — available in the full bundle