IREScentralIRESG339 · De novo family 339
GraphClust IRESGRoute A · GraphClust de novo10 members
De novo family 339 family, produced via RouteA_graphclust_5p7.
Consensus structure
Interactive · forna force-directed layout
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interactive force layout — drag nucleotides to rearrange · scroll to zoom · press “c” to centre
Interactive forna force-directed layout with stock colouring and parameters, rendered in the browser from the consensus sequence and dot-bracket string. Default source: RNAfold MFE.
Consensus sequence & dot-bracket
Members
| IRES ID | Virus family | Virus genus | Length (nt) | CM score | Activity |
|---|---|---|---|---|---|
Supergroup015--picorna_wastewater_ERR3463890_k99_33044_flag1_multi82_len9289_5UTR_0 | nan | nan | 1049 | 1014.9 | — |
Supergroup015--picorna_wastewater_ERR3463882_k99_40094_flag1_multi24_len8011_5UTR_0 | nan | nan | 1042 | 1004.4 | — |
Supergroup015--picorna_wastewater_ERR3463878_k99_141411_flag1_multi22_len9277_5UTR_0 | nan | nan | 1049 | 1017.5 | — |
Supergroup015--picorna_wastewater_ERR3463892_k119_7867_flag1_multi116_len9239_5UTR_0 | nan | nan | 1010 | 924.4 | — |
Supergroup015--picorna_wastewater_ERR3463915_k99_155189_flag1_multi14_len8403_5UTR_0 | nan | nan | 1370 | 936.4 | — |
Supergroup015--picorna_wastewater_ERR3463900_k99_24826_flag1_multi132_len9288_5UTR_0 | nan | nan | 1049 | 1016.7 | — |
Supergroup015--picorna_wastewater_ERR3463891_k119_34823_flag1_multi120_len9278_5UTR_0 | nan | nan | 1049 | 1015.7 | — |
Supergroup015--picorna_wastewater_ERR3463919_k119_26342_flag1_multi20_len9277_5UTR_0 | nan | nan | 1049 | 1015.5 | — |
Showing 8 sample rows of 10 members; the full member table ships with a future release.
Taxonomy distribution
Virus family
Virus genus (top 12)
Virus host (top 12)
Taxonomy and host counts are aggregated from the full export metadata over all 10 members; the member table above shows only a sample. Dominant virus family: nan. Host species are annotated only for NCBI-sourced genomes; members from metagenomic sources count as "unknown".
Activity
No experimental activity data for members of this family.
Model & downloads
- Consensus structure (PNG, RiboGraphViz)
- Covariance model (
final.cm) — available in the full bundle - Seed alignment (
final.sto, Stockholm) — available in the full bundle - Member FASTA — available in the full bundle