IREScentralIRESG340 · De novo family 340
GraphClust IRESGRoute A · GraphClust de novo11 members
De novo family 340 family, produced via RouteA_graphclust_5p7.
Consensus structure
Interactive · forna force-directed layout
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interactive force layout — drag nucleotides to rearrange · scroll to zoom · press “c” to centre
Interactive forna force-directed layout with stock colouring and parameters, rendered in the browser from the consensus sequence and dot-bracket string. Default source: RNAfold MFE.
Consensus sequence & dot-bracket
Members
| IRES ID | Virus family | Virus genus | Length (nt) | CM score | Activity |
|---|---|---|---|---|---|
Supergroup011--narna-levi_soil_SRR5252363_k141_204122_flag1_multi9_len3293_5UTR_0 | Mitoviridae | Duamitovirus | 338 | 413.1 | — |
MN033605.1_5UTR_0 | Mitoviridae | Mitovirus | 326 | 413.3 | — |
Supergroup011--narna-levi_soil_SRR6227499_k141_162635_flag1_multi15_len3309_5UTR_0 | Mitoviridae | Duamitovirus | 346 | 413.3 | — |
Supergroup011--narna-levi_soil_SRR5258562_k141_54600_flag1_multi19_len3285_5UTR_0 | Mitoviridae | Duamitovirus | 324 | 409.4 | — |
Supergroup011--narna-levi_soil_SRR5260220_k141_56165_flag1_multi11_len3283_5UTR_0 | Mitoviridae | Duamitovirus | 325 | 408.1 | — |
Supergroup011--narna-levi_soil_SRR5258560_k141_188216_flag1_multi5_len3291_5UTR_0 | Mitoviridae | Duamitovirus | 324 | 408.8 | — |
Supergroup011--narna-levi_soil_SRR5258660_k141_66832_flag1_multi19_len3308_5UTR_0 | Mitoviridae | Duamitovirus | 326 | 412.2 | — |
Supergroup011--narna-levi_soil_SRR5258598_k141_9279_flag1_multi17_len3262_5UTR_0 | Mitoviridae | Duamitovirus | 285 | 326.9 | — |
Showing 8 sample rows of 11 members; the full member table ships with a future release.
Taxonomy distribution
Virus family
Virus genus (top 12)
Virus host (top 12)
Taxonomy and host counts are aggregated from the full export metadata over all 11 members; the member table above shows only a sample. Dominant virus family: Mitoviridae. Host species are annotated only for NCBI-sourced genomes; members from metagenomic sources count as "unknown".
Activity
No experimental activity data for members of this family.
Model & downloads
- Consensus structure (PNG, RiboGraphViz)
- Covariance model (
final.cm) — available in the full bundle - Seed alignment (
final.sto, Stockholm) — available in the full bundle - Member FASTA — available in the full bundle