IREScentralIRESG342 · De novo family 342
GraphClust IRESGRoute A · GraphClust de novo15 members
De novo family 342 family, produced via RouteA_graphclust_5p7.
Consensus structure
Interactive · forna force-directed layout
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interactive force layout — drag nucleotides to rearrange · scroll to zoom · press “c” to centre
Interactive forna force-directed layout with stock colouring and parameters, rendered in the browser from the consensus sequence and dot-bracket string. Default source: RNAfold MFE.
Consensus sequence & dot-bracket
Members
| IRES ID | Virus family | Virus genus | Length (nt) | CM score | Activity |
|---|---|---|---|---|---|
Supergroup018--tombus-noda_lake_water_SRR6435373_k141_27447_flag1_multi58_len7375_5UTR_0 | Circoviridae | nan | 480 | 574.2 | — |
Supergroup018--tombus-noda_lake_water_SRR5833861_k141_110702_flag1_multi384_len7330_5UTR_0 | Circoviridae | nan | 447 | 549.7 | — |
IMGVR_UViG_3300012688_000011 | nan | nan | — | — | — |
IMGVR_UViG_3300012727_000208 | nan | nan | — | — | — |
Supergroup018--tombus-noda_lake_water_SRR5833617_k141_22104_flag1_multi192_len7444_5UTR_0 | Circoviridae | nan | 552 | 562.9 | — |
IMGVR_UViG_3300016693_000011 | nan | nan | — | — | — |
Supergroup018--tombus-noda_lake_water_SRR5833863_k141_92461_flag1_multi158_len7351_5UTR_0 | Circoviridae | nan | 452 | 521.6 | — |
Supergroup018--tombus-noda_lake_water_SRR6435419_k141_31568_flag1_multi81_len7346_5UTR_0 | Circoviridae | nan | 467 | 574.2 | — |
Showing 8 sample rows of 15 members; the full member table ships with a future release.
Taxonomy distribution
Virus family
Virus genus (top 12)
Virus host (top 12)
Taxonomy and host counts are aggregated from the full export metadata over all 15 members; the member table above shows only a sample. Dominant virus family: nan. Host species are annotated only for NCBI-sourced genomes; members from metagenomic sources count as "unknown".
Activity
No experimental activity data for members of this family.
Model & downloads
- Consensus structure (PNG, RiboGraphViz)
- Covariance model (
final.cm) — available in the full bundle - Seed alignment (
final.sto, Stockholm) — available in the full bundle - Member FASTA — available in the full bundle