IREScentralIRESG343 · De novo family 343
GraphClust IRESGRoute A · GraphClust de novo10 members
De novo family 343 family, produced via RouteA_graphclust_5p7.
Consensus structure
Interactive · forna force-directed layout
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interactive force layout — drag nucleotides to rearrange · scroll to zoom · press “c” to centre
Interactive forna force-directed layout with stock colouring and parameters, rendered in the browser from the consensus sequence and dot-bracket string. Default source: RNAfold MFE.
Consensus sequence & dot-bracket
Members
| IRES ID | Virus family | Virus genus | Length (nt) | CM score | Activity |
|---|---|---|---|---|---|
IMGVR_UViG_3300001810_000060 | Dicistroviridae | nan | — | — | — |
Supergroup015--picorna_wetland_SRR6203186_k141_134712_flag1_multi29_len9670_5UTR_0 | nan | nan | 931 | 613.3 | — |
Supergroup015--picorna_wetland_SRR6203184_k141_28505_flag1_multi123_len9782_5UTR_0 | nan | nan | 1033 | 613.3 | — |
Supergroup015--picorna_wetland_SRR5247038_k141_84465_flag1_multi326_len9807_5UTR_0 | nan | nan | 1003 | 613.3 | — |
Supergroup015--picorna_wetland_SRR5247040_k141_20807_flag1_multi60_len9794_5UTR_0 | nan | nan | 1023 | 613.3 | — |
IMGVR_UViG_3300001806_000058 | Dicistroviridae | nan | — | — | — |
IMGVR_UViG_3300001808_000216 | Dicistroviridae | nan | — | — | — |
IMGVR_UViG_3300003938_001823 | Dicistroviridae | nan | — | — | — |
Showing 8 sample rows of 10 members; the full member table ships with a future release.
Taxonomy distribution
Virus family
Virus genus (top 12)
Virus host (top 12)
Taxonomy and host counts are aggregated from the full export metadata over all 10 members; the member table above shows only a sample. Dominant virus family: Dicistroviridae. Host species are annotated only for NCBI-sourced genomes; members from metagenomic sources count as "unknown".
Activity
No experimental activity data for members of this family.
Model & downloads
- Consensus structure (PNG, RiboGraphViz)
- Covariance model (
final.cm) — available in the full bundle - Seed alignment (
final.sto, Stockholm) — available in the full bundle - Member FASTA — available in the full bundle